PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D03G0157
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 547aa    MW: 56473.4 Da    PI: 8.6945
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D03G0157genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.6e-056183123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C++C+k F r  nL+ H r H
  Gh_D03G0157 61 FVCEICNKGFQRDQNLQLHRRGH 83
                 89*******************88 PP

2zf-C2H211.10.0013137159123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC +C+k +  +s+ k H + +
  Gh_D03G0157 137 WKCDKCSKKYAVQSDWKAHSKIC 159
                  58*****************9876 PP

3zf-C2H211.40.00096167185523
                  TTTEEESSHHHHHHHHHHT CS
      zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                  dCg++Fsr++++ +H   +
  Gh_D03G0157 167 DCGTVFSRRDSFITHRAFC 185
                  9**************8765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.56E-76083No hitNo description
Gene3DG3DSA:3.30.160.601.8E-56083IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0176183IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9496183IPR007087Zinc finger, C2H2
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
SMARTSM00355190102132IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.1E-4125158IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.56E-7132157No hitNo description
SMARTSM00355150137157IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MPVEVDNSST VSGDASVSST GNQNPPPKSA VKKKRNLPGM PDPDAEVIAL SPTTLLATNR  60
FVCEICNKGF QRDQNLQLHR RGHNLPWKLR QRSSKEVKKR VYVCPEPTCV HHDPSRALGD  120
LTGIKKHFCR KHGEKKWKCD KCSKKYAVQS DWKAHSKICG TREYKCDCGT VFSRRDSFIT  180
HRAFCDALAV ESAKTQTNPS SESDPKVQAA DSSPRRSPPA APPPVSAPSA ITSSDIRIQS  240
SVLAEDPSTV VEEAPTPAPA PAPPPAGLNG SSSSSVSLVS SGCSSSSSSV FSSLFTSTTV  300
SASIHPPQPL APAPPLVGLN GSCSGSVSLV SSGASSSSSS GVFASLFASS TVSASIQPPQ  360
TPALTNLIRA DLAPSTSIEP ISLCLSTSHG SSIFGTTGQE RRQHAPPLQP AMSATALLQK  420
AAQMGAAASN ASLLRGLGIV SSSAPQENLQ WGQAQVDPDN ASIAAGLGLG LPCDGSSGLK  480
ELMMGTPVFG PKQTTLDFLG LGVAAGGNPN ASLSALITSI GGGFDATTAA ASFRGGDYTS  540
KDIGRSS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.201510.0boll| ovule
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012469451.10.0PREDICTED: protein indeterminate-domain 2-like isoform X1
SwissprotQ9LVQ70.0IDD1_ARATH; Protein indeterminate-domain 1
TrEMBLA0A0B0PEB20.0A0A0B0PEB2_G
STRINGVIT_04s0023g01430.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-111indeterminate(ID)-domain 2